rs27536306 SNP Detail

Summary

• ID
  rs27536306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:120462700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGGCAG CCTAGGTGAA
  AGGGTATGCA AGGAAGAAAC GTTGCTTTTT TCCTGCTTGC TTTCGCTTTT GCCTGCAAGT
  CCACCCATCC TGCTGCTGTA TAGTCTAGTT TCACTGCATC CGGTAAGCCC ACCTAATAAA
  TTCCTTTTTA GTAACATCCA TCCTATCATC TCTGCTCCTT CAGAGACTGA CTAATACAAG
  Y
  GCTCTACAAT GCCCATATGG TTTCCCCTAC ACCAAAGCGG GGAGACCGGA GACTCATAAA
  AGCTGATGGC TCCTCTCCTC CTTGCAAGTG GCAGCCAATT ATTAGATCTG GCTAAAGAGC
  CCAGGGAGCT CTTGGTGCTG TCCCCTGAGA GCTTCCAGAG AGAACAAGAG GCCATCAGTG
  AGCAGTATGG GCTCCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37712345	NES09209609	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27536306					SNP	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37712345	NES09209609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120462700 () rs orientation: forward

Symbol	Name	Function Class
D4Mit76	DNA segment, Chr 4, Massachusetts Institute of Technology 76	259 bp distal
Gm8439	predicted gene 8439	Intron
Gm12860	predicted gene 12860	within coordinates
Rr598831	regulatory region 598831	1478 bp proximal