rs27521289 SNP Detail

Summary

• ID
  rs27521289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119296474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTAGCA ACTTCAGCTA
  CAGTGTCTAG ATGCCGTGCA GCTGAGCTCT GTTTAAAGAT CATAGTTGGC TTTATTTGCA
  CTTCTAGAAT CAGGCAGCAT CTCCTTCCAC CAAGTAGAAG ATGTGCTCCC ATGCCCCCTC
  TAATTTTCCC CATGGGCTGG GGTCTGACTT CATAGTCTGC TGCAACTGGC TAGTTTGAAG
  R
  AGAGTGGGAA GGGGCCATTT AAGTCAGTTA AGTTTCAAGA ATACAGCAGG GCTTTTGTGG
  AAACAAATGT TTAACTCTGC TAGGGGGGCA AAACATTTCC ATAAAGGTTT TCACAGGGCG
  GGGAAGATAA AAAGATTTGA GTTCCTTGTC ATAAACAAAA GTTTTATAGT GCTTTACAGA
  AAGACAATCT CAAGCATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37684323	NES09207730	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27521289					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684323	NES09207730	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119296474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598588	regulatory region 598588			492 bp distal
Zmynd12	zinc finger, MYND domain containing 12			Intron
				Noncoding-Transcript-Variant