rs27521288 SNP Detail

Summary

• ID
  rs27521288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119296501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATGCCGT GCAGCTGAGC
  TCTGTTTAAA GATCATAGTT GGCTTTATTT GCACTTCTAG AATCAGGCAG CATCTCCTTC
  CACCAAGTAG AAGATGTGCT CCCATGCCCC CTCTAATTTT CCCCATGGGC TGGGGTCTGA
  CTTCATAGTC TGCTGCAACT GGCTAGTTTG AAGAAGAGTG GGAAGGGGCC ATTTAAGTCA
  R
  TTAAGTTTCA AGAATACAGC AGGGCTTTTG TGGAAACAAA TGTTTAACTC TGCTAGGGGG
  GCAAAACATT TCCATAAAGG TTTTCACAGG GCGGGGAAGA TAAAAAGATT TGAGTTCCTT
  GTCATAAACA AAAGTTTTAT AGTGCTTTAC AGAAAGACAA TCTCAAGCAT ATGACATGGG
  CGTGTGTGTA GAACCACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37684322	NES09207731	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27521288					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684322	NES09207731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119296501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598588	regulatory region 598588			519 bp distal
Zmynd12	zinc finger, MYND domain containing 12			Intron
				Noncoding-Transcript-Variant