rs27510526 SNP Detail

Summary

• ID
  rs27510526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118844150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGGTAC CCAGCAGTCA
  CATGGTACAC ATACACACAT GCAAACAAAG CCCACATATA CATAAACTGA ATGAAAAATT
  TTTAGCAAAA CAGTCAATGC AGCACTTATT GGAATGTGAA TCATAAGGCC AGCCCTCAGT
  GAATCAGCTC CTGTGATAAC CAAGTCCTTT ATTTGAAAAC CTTCCTTTCG CCCTCTGCTC
  Y
  TCCCTGTTCC AGAGACAGCT GCATCTTCTT GTGCAGTGCC AGCCTCGTCC CATAGGCAAG
  ATGGTGAATG TCACTGTGAA CAGTTTTGGC CGTATTGGGC GCTTAGTTAC CAGGGCTGCT
  TTCTGCTCTG CATCTGGCAA AGTGGAAATT ATTACCATCA AAAACCCCTT CATTGACCTC
  AACTGCATGG TCTACATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37686059	NES09200273	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27510526					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686059	NES09200273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118844150 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12864	predicted gene 12864	61 bp upstream
Gm12865	predicted gene 12865	within coordinates
Rr598446	regulatory region 598446	1672 bp proximal
Rr598447	regulatory region 598447	1762 bp proximal
Tssr38691	transcription start site region 38691	9 bp downstream
Tssr38692	transcription start site region 38692	517 bp upstream