rs27510518 SNP Detail

Summary

• ID
  rs27510518
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118845794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAAGG AAAGAAAACC
  TCTCTTTGCC AGTCTGTGCA TGTGCCAGGT GGTGCATGCC TTCAATCCCT GTACTCAGGA
  GAGTTCAAGG TCAGCCTAGT CTACAGAGCA AGTTCCAGCA CAGCTGGGAC TACACAGAAA
  AACCCTGTCT GGAAAAAAAG AAAAGAAAAC CTTCCTCTGA GGAAAAAAAT CTTTGTATGT
  W
  GCACACAGAA TTCAGGTTTT GTCGTCTGAC AGAGAGGATT GTGTTTCTAG GACTTTGTCT
  CTCAAAATGA ATGGTGCTAG ACAGTTGGAT GTGTTGTGTG GCTAGGCTCA AGGCACTCCA
  GTGACATCTG GTGGCAGGGT ACCTCCGTAG CACAAGCAAA ATTTGAAAGG CTCTTTAGAA
  TGCAAGCTGC AGACTCAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37686050	NES09200251	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	T	A		A
ss321284941	CHEV_4_118661202	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27510518					SNP	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686050	NES09200251	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118845794 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12864	predicted gene 12864	578 bp downstream
Gm12865	predicted gene 12865	within coordinates
Rr598446	regulatory region 598446	28 bp proximal
Rr598447	regulatory region 598447	118 bp proximal
Tssr38691	transcription start site region 38691	1653 bp downstream
Tssr38692	transcription start site region 38692	1126 bp downstream