rs27510515 SNP Detail

Summary

• ID
  rs27510515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118846396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAAAGCTA GGGGGTAGTA AAGAAAAGAT TCTTCTACAA
  GATTACCTGA CAATAATCAT CACGAAAAAC TCCAGAACCA CCAGCTTGCA CAGTGGTCAC
  Y
  GCAACCTCAT ACAAAAAAAA AACTTCTACA AGGATGTGTG CCTGAAGACT GACTGTTGTG
  TCTGGCCAGC AGATCACAGC CTGGGTTTTA GCCTGGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37686047	NES09200233	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	T	C	C	C	C	C	C	C
ss147321688	ENSMUSSNP4836537	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27510515					SNP	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686047	NES09200233	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118846396 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12864	predicted gene 12864	1180 bp downstream
Gm12865	predicted gene 12865	within coordinates
Rr598446	regulatory region 598446	348 bp distal
Rr598447	regulatory region 598447	463 bp distal
Tssr38692	transcription start site region 38692	1728 bp downstream