rs27497309 SNP Detail

Summary

• ID
  rs27497309
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117465864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATCAGAG TTGTGCAAAG
  GGCACCCAAG GGAAGGCTTC CGCTGCATCC ATGCCCTCTG AGCTGTAGCG ACTCCCAGGT
  GATGGCCTGG CTCAGTCCCA CAGCTTTCTC TTCCTGGCTG GGCTCACCCT GGCCTAGAGC
  CCAGCCTAAT GCTATATGGC AGCTGTGGAC GATGCCATGC CAGAGAAGCA TGTATACCAG
  W
  GGGAAGGAGT GAGAAGGGCA GGGTCTGGCA GTAGAGAATA CACAGGAAGC AGCAAATAGA
  CCTGGATTCA GGTTGTGGGC CTGTTGGTGG GGATCTTGGG AAAGTCTCAA GAGCACTCAC
  AACCTCTTCG GGATTTGGTA AATGTCATCT GTGTCCCCTG ACATCTGTGG GAAGTACTTT
  CTGCAGAACA GGTGTGGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691730	NES09209626	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497309					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691730	NES09209626	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117465864 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
Rr598174	regulatory region 598174			within coordinates
Rr598175	regulatory region 598175			656 bp proximal
Tssr38625	transcription start site region 38625			1077 bp upstream