rs27497306 SNP Detail

Summary

• ID
  rs27497306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117466495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACCATC TAATGGGATC
  GTAACTGGCT CTTTTCCAGC CTCAAACTTG TATGTCTCTT CCTGTTTTAG AGGACGACTT
  CAGGATTTGC CCCACCCCCA CCCTTGACTC CCCTCCCCTT CTAAAGTTCT AGGTGTTCTA
  GGTGGACTAT AGTTCTCAGT TCTTCAAATA ACATATTTTA CCAAGGCCTT GGGAAAAGAT
  R
  TTTTAGTACT CACAGTGTTC TCCCAAGAAA ACTCCCCACC TTTTCCATCA CCCCCACACC
  GCAGCTGCAG CATGGCTGCT GCTGGTGAAA TTCATTAGTG CTCGCTGACA GCAGTGGCGA
  CAGAGGCACT CACTGTCTGC TTCCTGCTCC CTCACCCTCC GTGCTGCTGC TTCACACACA
  CTGGTATTTA AATCTGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691727	NES09209629	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497306					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691727	NES09209629	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117466495 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
Rr598174	regulatory region 598174			592 bp distal
Rr598175	regulatory region 598175			25 bp proximal
Tssr38625	transcription start site region 38625			446 bp upstream
Tssr38626	transcription start site region 38626			1525 bp upstream