rs27497304 SNP Detail

Summary

• ID
  rs27497304
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117466812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGACAGAGG CACTCACTGT
  CTGCTTCCTG CTCCCTCACC CTCCGTGCTG CTGCTTCACA CACACTGGTA TTTAAATCTG
  ATGGGCTGCT TATAGACTTC TTGTACCGTG ACAAGTTTGG GGAGGGGGTT GGGGAGGAGG
  AGACAGACAA GGAGCCAGCT GTCATGCTGG TATTTCAGAC ACTACTTTCT CCTGACCCTT
  K
  GCAGGCTCCA GCAAGTGTAT CATCTTTCTG AAGCCTGTGG TTGGAATTGT AACGTGCAGA
  TATCCCAGAG GATGGGAGCA AATGTGGGGG CAGACTGGGC CGAGAAGTCA GCAGTTCAGT
  CTCCCAGGGC TGTGGGCAGT TGGGAACAGC GGAGGGACAG TGCACATGTT TGTTGAAGCT
  GAGTCTCTGT AAGTACTACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37691725	NES09209631	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27497304					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691725	NES09209631	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117466812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr598174	regulatory region 598174			909 bp distal
Rr598175	regulatory region 598175			within coordinates
Rr598176	regulatory region 598176			1834 bp proximal
Tssr38625	transcription start site region 38625			129 bp upstream
Tssr38626	transcription start site region 38626			1208 bp upstream