rs27497300 SNP Detail

Summary

• ID
  rs27497300
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117467463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCTGTGC TTTGTCTTTT
  TTTTTTTTTT TTTTTTTCTT CAGTTTTTCG AGACAGGGTT TCTCTGTGTA GCCCTGGCTG
  TCCTGGAACT CACTTTGTAG ACCAGGCTGG CTTCGAACTC AGAAATCCGC CTGCCTCTGC
  CTCCCGAGAG CTGGGATTAA AGGTGTGCGC CAACTACCGC TCGGTGTGCT TTGTCTTTAA
  W
  CTTGAAAGAG GAGTCCCTAG TTTCCCCCTT TATCTTGTAA CTCCTCCCCT CAATCCATTT
  TGAAGCTACT GAGTGATTCT AGAACATTCC CCTTGGCCAT TTACCTGCAA TTCACTTTTC
  TGGCATTTTT CCTTACTTAG TCTCATCTGG CCCAGAAGCA TCTTCACAAA CCTTTGTAGG
  CTCAGTGTCT CCTCATCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37691721	NES09209600	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27497300					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691721	NES09209600	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117467463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
Rr598174	regulatory region 598174			1560 bp distal
Rr598175	regulatory region 598175			338 bp distal
Rr598176	regulatory region 598176			1183 bp proximal
Tssr38625	transcription start site region 38625			509 bp downstream
Tssr38626	transcription start site region 38626			557 bp upstream