rs27497299 SNP Detail

Summary

• ID
  rs27497299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117467671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGTCCC TAGTTTCCCC
  CTTTATCTTG TAACTCCTCC CCTCAATCCA TTTTGAAGCT ACTGAGTGAT TCTAGAACAT
  TCCCCTTGGC CATTTACCTG CAATTCACTT TTCTGGCATT TTTCCTTACT TAGTCTCATC
  TGGCCCAGAA GCATCTTCAC AAACCTTTGT AGGCTCAGTG TCTCCTCATC CAGCCAAATA
  S
  CTCCTCTGAG CCCATTTTCA AAGTTTGTTT CCCTTGACTT TAAGTCTCAT AGAGTAGGTG
  ATGGAGGTGA TGTTGCTTGC TCAAGAACAA CAAGCACTTG ATAATAGAGC CATACAGCAG
  GTTTGGGGTG AGGCATGGGG TGTGGTGCGC TGCCATTGAG AGCCTTCCCA GCACCTGGTC
  TCACCATGGT GGAGGTCACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691720	NES09209601	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497299					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691720	NES09209601	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117467671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
Rr377061	regulatory region 377061			1960 bp upstream
Rr598174	regulatory region 598174			1768 bp distal
Rr598175	regulatory region 598175			546 bp distal
Rr598176	regulatory region 598176			975 bp proximal
Tssr38625	transcription start site region 38625			717 bp downstream
Tssr38626	transcription start site region 38626			349 bp upstream