rs27497297 SNP Detail

Summary

• ID
  rs27497297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117468301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATAGCC CTGTGTAGTC
  AGTCCCTGGC TGTCCTGGAA CTTACTCTGA CTTGAACTCA GAGATCCACC TGCCTCTGCC
  TCCTGAGTAC TGAGATTAAA GGTGTGGACC ATGATTCCTG ACTCATAGGT ATGTTCTTGA
  GCTGTCAAGG TCCACTTTTG ATGTTATCAG CATCTGTAAC CCTGTAGTCC TGCCCTTTCC
  Y
  GAATCTAGCA TTCCCTGCAG CCTGTCTTAT AGGCTTCTAG CCCTCCATTT CTGTCTAGGG
  TGACTTTTCT TTGTTCCCTC TTCTTGCTGA TCCCTAGCCC TGAGTGCTAT GTCTGATTGG
  GGTAGGCCTG TGCTGTCTTC CGACATGGCA TATCAAAAGG GAGAAGGAAG ATAACTAGGG
  TTGAGAAGTA TTTAGAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691718	NES09209574	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497297					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691718	NES09209574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117468301 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
Rr377061	regulatory region 377061			1330 bp upstream
Rr598175	regulatory region 598175			1176 bp distal
Rr598176	regulatory region 598176			345 bp proximal
Rr598177	regulatory region 598177			1694 bp proximal
Tssr38625	transcription start site region 38625			1347 bp downstream
Tssr38626	transcription start site region 38626			276 bp downstream