rs27497296 SNP Detail

Summary

• ID
  rs27497296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117468378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCTGAG TACTGAGATT
  AAAGGTGTGG ACCATGATTC CTGACTCATA GGTATGTTCT TGAGCTGTCA AGGTCCACTT
  TTGATGTTAT CAGCATCTGT AACCCTGTAG TCCTGCCCTT TCCTGAATCT AGCATTCCCT
  GCAGCCTGTC TTATAGGCTT CTAGCCCTCC ATTTCTGTCT AGGGTGACTT TTCTTTGTTC
  Y
  CTCTTCTTGC TGATCCCTAG CCCTGAGTGC TATGTCTGAT TGGGGTAGGC CTGTGCTGTC
  TTCCGACATG GCATATCAAA AGGGAGAAGG AAGATAACTA GGGTTGAGAA GTATTTAGAG
  GCTTGAGTGT TAATTTTTAT ACATCAGCAG TGGCTAAGTG GGTGGGTTCA ATCATGAATC
  TGCCTTTTCT CCACCCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691717	NES09209575	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497296					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691717	NES09209575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117468378 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
Rr377061	regulatory region 377061			1253 bp upstream
Rr598175	regulatory region 598175			1253 bp distal
Rr598176	regulatory region 598176			268 bp proximal
Rr598177	regulatory region 598177			1617 bp proximal
Tssr38625	transcription start site region 38625			1424 bp downstream
Tssr38626	transcription start site region 38626			353 bp downstream