rs27497289 SNP Detail

Summary

• ID
  rs27497289
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117469457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCATAGA GATTTGTGGC
  ATTTCTGAAA CAGAGGACAG CTGGTGACAA CACTCTGAGA CTTTGTATGG GTGAATGAGG
  AGGCTGCATG GAAACAAGCT GTGTTTATCC CAGAGGGGTC TCTTTGCAGG GTCTTTGCTC
  TGGCTTCTCC TGACCCACTC CTTTCGATGG CTGGGCCTCT GTGCCTTCAT GGTCCACTGA
  K
  GATTTGAGGC ATTCCTTGCC TACATGTCCC AGGAACACAG TGGTTTCTAC AGATGAGCCA
  TGTGTACACA TTTCAGTGCT GTTGGCCTCC AGGCCTGACA AGTCACTCTT TGAGTCCTGT
  GAGGCAGATG GCAGTAGATG ATGACTTCAG CCTGCTGTTC CCTCCTCTCT AAGTCACACT
  CCCTAGCTGA GTTTACTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691710	NES09209582	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497289					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691710	NES09209582	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117469457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
Rr377061	regulatory region 377061			174 bp upstream
Rr598176	regulatory region 598176			163 bp distal
Rr598177	regulatory region 598177			538 bp proximal
Tssr38626	transcription start site region 38626			1432 bp downstream