rs27496548 SNP Detail

Summary

• ID
  rs27496548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116140690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTGAAC AACACAAGTA
  TACACTTGAC ACAGTGTATA AGAACATCAT GCCTACATGG AGGCCAGTCC TGTTGTAAGT
  TATGCCATGT CCAGCTGATA GTCCTAGGAG GCCTGCTCTT CTTGTGAAGG GAAACTGAGG
  AGAAGATCTT GAGGAAAGGG GAGATTTGAG GGGGGAGCTG GGAAGAGTGG AGGTATTGGG
  R
  TCTGAAAATC CAAAACAACC CAAGCAGTCA CAAGAGTCCA GCAAAGCAAG ATCTTTATTT
  GAATTAGGTA GCAAAAACTG AACCAGGGAC AACAGCATAT ATTTGAGAGC TGACTATGTC
  TTTGAACATT CACCTTAGTG AAGCAGAAAA ATAATAAAGC CCATAGGCAT CTGTGGTGGT
  TTGAATAGGT TTGGCCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37694872	NES09229892	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	A	A	G		G
ss321277355	CHEV_4_115956098	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27496548					SNP	A	A	A	A	A	A	G	A	A	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694872	NES09229892	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116140690 () rs orientation: forward

Symbol	Name	Function Class
Gm49337	predicted gene, 49337	Intron
Gm68669	predicted gene, 68669	within coordinates
Pik3r3	phosphoinositide-3-kinase regulatory subunit 3	Intron
Rr597898	regulatory region 597898	1084 bp distal