rs27496546 SNP Detail

Summary

• ID
  rs27496546
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116141269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGGGTC AAGGTGTATA
  ACTCTTGGCT CCTCCAGCAC CAAGTCTGCC TGCATGCTGC CATGTTTTCT GTCATGGCGC
  TAATGGACTA AACCTCTGAA ACTAAACCAG CCCCAATTAA ATGTTTGCCT TTATAAGAGT
  TGCCTTGGTC ATGGTGTCTC TTCACATCAG TGAAACCCAA ACTAAGACAG TATCTATGCC
  M
  AGGTACAGTT ACAACTTTTC ATCAATCAGA ATCATTTGTT CTTGTCCTGG TTAAGAACAC
  TCACTGTGTT TTGGGGCACA AAAGAAGAAT GAGAAAGAAG TTGGCTAGCC ACCTGGAAAG
  CCCTAGCGCC CCGAGAGCCT GGGAACTTGA CCTTAATTTT ACCTTATGAT CAAAATGGAG
  TCTGAAAACA GAATAGCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694870	NES09229885	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27496546					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694870	NES09229885	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116141269 () rs orientation: forward

Symbol	Name	Function Class
Gm49337	predicted gene, 49337	Intron
Gm68669	predicted gene, 68669	within coordinates
Pik3r3	phosphoinositide-3-kinase regulatory subunit 3	Intron
Rr597898	regulatory region 597898	1663 bp distal