rs27480421 SNP Detail

Summary

• ID
  rs27480421
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116305680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCACCCA TCTTGCTCAC
  TGAAGTGCTA GAATTGCAGA TATACTTTTA ACATTGGCTC CAGGTATCTA ACTCTGGTCA
  CCAGGCTTGC ACAACAACTG CCTACCTAAC AGCCCAGCAT GACTCTTATT TCATTCACTG
  TACTATCAGT CATGAAGAAT TTATTATTTA TTTTGTAAAG AAAATAGAAT TCAAAATGCA
  K
  AGAGAGCTGG AAGTCAGAAA AAGAGACACA AATTACTACC CTTAAGGAGC AAATGTTCTA
  ATATGGAAGA AAATCAGTAA GTACCAAAAA ATGTGGCCAT ACTATCAATA GAAGATAAGA
  ATACAACGAG AAAAGGAAGT GACCATGAGA GTTATTTTGG AACAGATAGT CAAGAAAGGT
  TTCTTTAAGA ATATTATCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37694644	NES09226013	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27480421					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694644	NES09226013	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116305680 () rs orientation: forward

Symbol	Name	Function Class
Gm12950	predicted gene 12950	305 bp upstream
Mast2	microtubule associated serine/threonine kinase 2	Intron
Rr597910	regulatory region 597910	235 bp proximal
Rr597911	regulatory region 597911	294 bp proximal
Rr597912	regulatory region 597912	378 bp proximal
Tssr38516	transcription start site region 38516	195 bp upstream