rs27480417 SNP Detail

Summary

• ID
  rs27480417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116306328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCAGTGA AATCAGATGC
  TATCAGAAGT CCACTGAGCT TCTGATTCCC AAGCTCCCTT TTCAGCATCT GGTGCGAGAA
  ATTGCTCAGG ACTTCAAAAC AGATCTGCTC TGCGCTTCCA GAGTGCAGCT ATTGGTGCTT
  TGCGGGAGGC AAGCGAGGCC TATCTGGTTG GCCTTTTTGA AGATACCAAT CTGTGTGCTA
  Y
  CCATGCCAAA CCTGTAACAA TTATGCCAAA AGATATCCAG CTAGCAAGCC GCATACGTGG
  AGAACGTGAT TAAGAGTCCA CTATGAGGGG AAACATTTCA TTCTTAAAAA AATTTTTTTT
  CCTCTTCTTC CTGTAATCAG TAGTTCTGAA TGTTAGATAT TTTTTCCATG GGGTCAAAGG
  TACCTAAGTA TATGATTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694640	NES09226017	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27480417					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694640	NES09226017	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116306328 () rs orientation: forward

Symbol	Name	Function Class
Gm12950	predicted gene 12950	within coordinates
Mast2	microtubule associated serine/threonine kinase 2	Intron
Rr597910	regulatory region 597910	392 bp distal
Rr597911	regulatory region 597911	186 bp distal
Rr597912	regulatory region 597912	238 bp distal
Tssr38516	transcription start site region 38516	446 bp downstream