rs27480416 SNP Detail

Summary

• ID
  rs27480416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116306528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGCCAA ACCTGTAACA
  ATTATGCCAA AAGATATCCA GCTAGCAAGC CGCATACGTG GAGAACGTGA TTAAGAGTCC
  ACTATGAGGG GAAACATTTC ATTCTTAAAA AAATTTTTTT TCCTCTTCTT CCTGTAATCA
  GTAGTTCTGA ATGTTAGATA TTTTTTCCAT GGGGTCAAAG GTACCTAAGT ATATGATTGC
  R
  AGTGGAAACA GAGGGGACAG AATCAGGTAT TGGCAGTTTC TCCATGTTTA CTTGTGTGTA
  TTTTTAATAT AAATGCAAGA TGTAAAGCAT TAATGCAAGC AAAATGTTTC AGAACACATT
  TTAACAGTTC AACTTCATAA CAATTATAAA TAAACCTGTT AAAATTTTCT GGACAATAAC
  AGCATTTGGA TTTTTTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694639	NES09226018	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27480416					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694639	NES09226018	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116306528 () rs orientation: forward

Symbol	Name	Function Class
Gm12950	predicted gene 12950	127 bp downstream
Mast2	microtubule associated serine/threonine kinase 2	Intron
Rr597910	regulatory region 597910	592 bp distal
Rr597911	regulatory region 597911	386 bp distal
Rr597912	regulatory region 597912	438 bp distal
Tssr38516	transcription start site region 38516	646 bp downstream