rs27479219 SNP Detail

Summary

• ID
  rs27479219
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118932108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGGAGAT ATGAACACAT CTTGGTTGCT TCAGAGGAAG
  ACTGGGGTCC CGTGCAGCGC TGCCCCTCCC CCTCAGCTCC CTCAGCATCC TCTTCCCTAC
  W
  TTCCTGTTAC TAAGCCTGTG TACTTGCACC AACAAGTCCC AGACCAAGGG AGCTGCTTTT
  CCTTGGTCCC TGTGGCCACG GTCACCCAGC ATTATTTAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37685646	NES09198604	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	T	A		T	A	T		T
ss321285050	CHEV_4_118747516	CHEVERUD	SCREENING_POP	f	SNP								T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27479219					SNP	A	T	A	A	A	T	A	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37685646	NES09198604	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118932108 () rs orientation: forward

Symbol	Name	Function Class
Gm35510	predicted gene, 35510	within coordinates
Rr377074	regulatory region 377074	476 bp downstream
Rr598481	regulatory region 598481	within coordinates
Rr598482	regulatory region 598482	1564 bp proximal
Tssr43077	transcription start site region 43077	1970 bp upstream
Tssr43078	transcription start site region 43078	1944 bp upstream