rs27479217 SNP Detail

Summary

• ID
  rs27479217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118932566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGACAGG AAAGCAAGGT
  CCAGCATGTG ACATCAATGC CCTGCTGGGA CTTCTGCTGA ATTCTCTTAA TAACCTCCCA
  TAACCTTCTG TAAAGACATT CTTATTTTGC TTGTTTATTG AGGGGTGTGT GTGTGTGTGT
  GTGTGCGTGT GTGTGTGTGC GTGTGTGTAT GTGTGGTCTC ACTATAACCC AGGCCAGCAC
  R
  TACGCCCACC ATCAACCTGA CACTCCTACC AGACTTGCCT ACCTTTTCCT CCTATGGTTC
  CAGCCCTTGC AAAGCAACAA AGACCAGCAC TTGAATTCCC TCTCCCTCCC TCTGCCTCCT
  CCCCGCCCCC CTCCTTCTGC GGGGTCCTGA GAGCCTAGAG TACACAGAGG TTGCTGAAGA
  CCAGAGTCAG GTACTGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37685644	NES09198607	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G		G	G	A	G		A
ss321285052	CHEV_4_118747974	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27479217					SNP	G	G	G	G	G	A	G	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37685644	NES09198607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118932566 () rs orientation: forward

Symbol	Name	Function Class
Gm35510	predicted gene, 35510	within coordinates
Rr377074	regulatory region 377074	934 bp downstream
Rr598481	regulatory region 598481	272 bp distal
Rr598482	regulatory region 598482	1106 bp proximal