rs27479213 SNP Detail

Summary

• ID
  rs27479213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118933883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATTCCTGC CATTGCCCGG CACCCAGCGA GGCAACTGGT
  TCCAGCAGCC ATGGGACACT AAGATAGGTC TAGAGAACCC AGCAGCATTC AACCAGTAGT
  Y
  TCCTGCCCAT GTCTAGCCAA ACCTGGACCT ATGCAGGCAC TCAGCCAGAA GGCAAGCTCT
  GAAGTTAGAT CCTGGTGATG TGGGGAGTCA GCGTTAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37685640	NES09198566	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	T	C	C	C	C	C	C	C
ss45591035	mCV22582310	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss147323303	ENSMUSSNP4637779	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27479213					SNP	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37685640	NES09198566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118933883 () rs orientation: forward

Symbol	Name	Function Class
Gm35510	predicted gene, 35510	within coordinates
Rr598481	regulatory region 598481	1589 bp distal
Rr598482	regulatory region 598482	within coordinates