rs27475825 SNP Detail

Summary

• ID
  rs27475825
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119237820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCAGAT GAAGATGGAG
  AACTCTCAGC TCCTCCTGCA CCATGCCTGC CTTGCTTCTG CCTTGATAAT GGACTGAACC
  TTTGAACCTG TAAGTCAGCC CCAATTAAAA TGTTGTCCTT ATCAGAGTCA CCTTGGTCAT
  GGTGTCTGTT CACAGCAGTA AAACCCTAAC TAAGACACGT GCTTACTTTA AATATCCATT
  M
  TGTACAGCCA CATCCATGTA CATTTTTTAG TTGTGTGATA AAACCTGCTA GAGAGTCCAC
  CTAAAACTAT TATGTGCCTT AGTGAATATA GAGTGATCAT CATGCAATGC TCTGTGGAGA
  GAAATGACTA CCAAGAGTGA GCACACCTGG TCGGGCAGAG CCACACTGCC TGTTTTATCA
  CCAGTGGTGT AAGAGCTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37684546	NES09209064	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C	C	C	C	C	C	C	C	C	C
ss147328350	ENSMUSSNP5228669	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27475825					SNP	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684546	NES09209064	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119237820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			1037 bp proximal