rs27458109 SNP Detail

Summary

• ID
  rs27458109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118528656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTTTGC ACTTGTGCCT
  GTTTTAAATT AAACTAAATG TTCGAACCTT TGGGTTTTTC ATTCTCTGGG ATTGGAGCCA
  GGCTTTCTTG GAACTGGATG CCCTTGGAGT GGGTGCCTGG TAGGGCTCCT CTGTGGTTAC
  TTGAATCCAC AAATCACCCA GCTTCTTTGG CTTGGACACC TAGAATGAGG GCCGAGGAAG
  R
  AGGAGCCGGG ACGTGGAAGG CCCTGGGGCT GGAAGAAAGG GCGAAGAAGG CTCTGGTCAG
  GGCCGAGGAG CCACCAGGCG GAGGTGTGGG GGAGGGCCCT AGCAACCCAA GGCCACAGAG
  ACTGGCCTCA TTCAAGGTTG GTTTCTCCCT TCTCCTGGTC TTCAGGCTGC CCATAGAAAG
  TTCCCCGAAA GCAGCCCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37652316	NES09028419	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27458109					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652316	NES09028419	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118528656 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	928 bp downstream
Cpgi12087	CpG island 12087	1467 bp distal
Pak6	p21 (RAC1) activated kinase 6	155 bp downstream
Rr397213	regulatory region 397213	1952 bp upstream
Rr563299	regulatory region 563299	1987 bp distal
Rr563301	regulatory region 563301	1362 bp distal
Rr563302	regulatory region 563302	within coordinates