rs27458107 SNP Detail

Summary

• ID
  rs27458107
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118528823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTGGAC ACCTAGAATG
  AGGGCCGAGG AAGGAGGAGC CGGGACGTGG AAGGCCCTGG GGCTGGAAGA AAGGGCGAAG
  AAGGCTCTGG TCAGGGCCGA GGAGCCACCA GGCGGAGGTG TGGGGGAGGG CCCTAGCAAC
  CCAAGGCCAC AGAGACTGGC CTCATTCAAG GTTGGTTTCT CCCTTCTCCT GGTCTTCAGG
  S
  TGCCCATAGA AAGTTCCCCG AAAGCAGCCC ATGTTCCTTT CTTAAAACTG AAGGACTCTG
  ACATTTCAAA AGAGTAGGGA AGTGACCAGA GACTTGGGTT CTAGCCCTGG GGTTGGGAAG
  TGGCAAAAAT ATCTTTTAAC TTTTACTCCG ACAGTGATTC CAATCTTCCT TTTCTGAGCT
  CTATACTCAA AACAGTGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37652313	NES09028422	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27458107					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652313	NES09028422	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118528823 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	761 bp downstream
Pak6	p21 (RAC1) activated kinase 6	322 bp downstream
Rr397213	regulatory region 397213	1785 bp upstream
Rr563301	regulatory region 563301	1529 bp distal
Rr563302	regulatory region 563302	39 bp distal
Rr563303	regulatory region 563303	1972 bp proximal