rs27458030 SNP Detail

Summary

• ID
  rs27458030
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118604969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC CCTCAATACC AGGTGTTTAT
  W
  CAGAGACCTA CCCTGGAGGG GGAGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37652127	NES09027261	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	T		T	A	T
ss147312486	ENSMUSSNP402278	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320471732	CHEV_2_118600224	CHEVERUD	SCREENING_POP	f	SNP							T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27458030					SNP	A	A	A	A	A	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652127	NES09027261	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118604969 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	204 bp proximal
Gm54146	predicted gene, 54146	within coordinates
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563334	regulatory region 563334	1709 bp distal
Rr563335	regulatory region 563335	1259 bp distal
Rr563336	regulatory region 563336	within coordinates
Rr563337	regulatory region 563337	977 bp proximal
Rr563338	regulatory region 563338	1416 bp proximal
Tssr19573	transcription start site region 19573	1708 bp downstream