rs27458025 SNP Detail

Summary

• ID
  rs27458025
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118605264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAAGAG ATTAGATTGG
  GGGTAAAATC ATTGCAAATA AAACTTTATC TGTTAACCAC AGGTGCTCCG TGTGTCACTT
  CCTGCTCTTG CCCTGTAAAG ATGCATCCAG GTAAGCAGCA TGACTGGGTG GCTAGGAGGT
  AGAAGAAGGA AGAGAAGAGA AAAGAGAGAG GGTAGGGCAG AGGCAATCAA TCAGCCCTAT
  M
  TGTTGACTGC CAAGTGTGCT TGCATGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTAGGTACC TGCGTGCAGT TTCAAAAGCA AACAAACCTT TGTATCCCAA AGAACACTTT
  ATATTTAAGA AATAAGTCTA TACATCCTTC ATCTCAATAG CTCTTCAACC CCAGGAGAAC
  AACAGGCAGG TCCCTTTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37652122	NES09027267	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C	C	C	C	C	C		C	C	C	C
ss147312506	ENSMUSSNP3928477	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27458025					SNP	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652122	NES09027267	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118605264 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	within coordinates
Gm54146	predicted gene, 54146	184 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563335	regulatory region 563335	1554 bp distal
Rr563336	regulatory region 563336	within coordinates
Rr563337	regulatory region 563337	682 bp proximal
Rr563338	regulatory region 563338	1121 bp proximal