rs27458020 SNP Detail

Summary

• ID
  rs27458020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118605759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTCAGTG GGTATCGTCC CCGTGATGTG AATTCCTGCT
  GGACAGTAAG GCAGAGTGAA GTGAGAGAGA TCTCCAAGCA GCAGACAGCA AGGGCAGAGA
  S
  CCAGAGCCGA GACCAGAAGG TTGTAACCAG GATATAAGGA GAAGCCAGCA CAGAGCTCTG
  AGGGGCTATA AGCAGATGTT CAGGAATGAA TGGGGGAGGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37652117	NES09027272	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27458020					SNP	G	C	C	C	G	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652117	NES09027272	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118605759 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	412 bp distal
Gm54146	predicted gene, 54146	679 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563336	regulatory region 563336	352 bp distal
Rr563337	regulatory region 563337	187 bp proximal
Rr563338	regulatory region 563338	626 bp proximal