rs27458015 SNP Detail

Summary

• ID
  rs27458015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118606238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCACAGGG ATGCACAAGT
  AAGCTTTGTA TTGACTTTCA ATATGAATCT GCTGTTAGTG GATGAATGAA GGAATAACTG
  TCAGGCAAGT GGCCAAGTCT GAGGAGCTGT GGTGGGGGCA GGAGTGAACA CAGGAACTAG
  CATCGGAGAA GAGGCAGGGG CAAGTTGTCC CCTTCAAAAC CAAAGGACTG AAACCACTCT
  Y
  TTTTCCCCCT TTCTCTCTAA CAGGTGGCAA GGTAGGCACA TTCTCGAGCC TTCCTCCCTC
  CCCTTCTTTG TGCCCCCCCC CCCCCCCCCG GCTGCTTCTT TCAGACCTCT CACCTCCTTC
  TTGGACCAGG ACTTTGCCAA ATGAAGCCAG GAAGACTCAG GCAGCAGCCT GGGAAGGGCG
  GAGTGCTGCC GCATCCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37652112	NES09027277	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27458015					SNP	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652112	NES09027277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118606238 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	891 bp distal
Gm54146	predicted gene, 54146	1158 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563336	regulatory region 563336	831 bp distal
Rr563337	regulatory region 563337	within coordinates
Rr563338	regulatory region 563338	147 bp proximal