rs27458014 SNP Detail

Summary

• ID
  rs27458014
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118606489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCCCTC CCCTTCTTTG
  TGCCCCCCCC CCCCCCCCCG GCTGCTTCTT TCAGACCTCT CACCTCCTTC TTGGACCAGG
  ACTTTGCCAA ATGAAGCCAG GAAGACTCAG GCAGCAGCCT GGGAAGGGCG GAGTGCTGCC
  GCATCCGCCC ACCCCCTGCC AACTGCAACC TTCTCCTTGG CAATCTCTCC TCTGTTTTCC
  M
  ATCTGTCTCT CTCCTTTCCT TACTTCCCTC CCCTGGCCCA GCAGCCCATC CTCTCCCCTG
  CTAGTTCCCA GCCTGTTCTG TGCTTCCCTG GCTGGCTGGC TTGCTTGCTC TCAAGCCCCA
  GCCACACTGC AGGCCTGCTA GGCCAGGCTT CTGCAAGGGA AGGAAGGGAA GGCTGCCTGC
  TCACTACCAC CCCCTCCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37652111	NES09027278	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27458014					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652111	NES09027278	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118606489 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	1142 bp distal
Gm54146	predicted gene, 54146	1409 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563336	regulatory region 563336	1082 bp distal
Rr563337	regulatory region 563337	105 bp distal
Rr563338	regulatory region 563338	within coordinates