rs27458013 SNP Detail

Summary

• ID
  rs27458013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118606978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG ATTTTCCTAG GCCTATAGCA
  R
  GAGACAAACA CTGCTGGTCT CCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652110	NES09027279	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	A		A	G	G	A		A	A	G	A		A
ss45207287	mCV22541968	ABI	CRAMUS_MOUSE	f	SNP	A	G					A		G
ss147312566	ENSMUSSNP2115633	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss320471745	CHEV_2_118602233	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27458013					SNP	A	G	G	G	A	A	A	A	G	G	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652110	NES09027279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118606978 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	1631 bp distal
Gm54146	predicted gene, 54146	1898 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563336	regulatory region 563336	1571 bp distal
Rr563337	regulatory region 563337	594 bp distal
Rr563338	regulatory region 563338	163 bp distal