rs27454934 SNP Detail

Summary

• ID
  rs27454934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120931260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAGAAC AGAGATGCAT
  AGATAAAGCT CCCTCTGCCC TAGCCCCACA GAGGAGCTAA GCAGAGAAAT ATAGACCAGT
  AAGTCCTGGC TCTGCCTCGT GAGGGTGTGG GAGACTGACT GCTAACAACC AAAGCCTCGG
  AAAGGCCAGT GACACACAGC TGTTCACATG TCCCAAGAGT GCAGGACGAT ATTCCAATGC
  Y
  TAAGATGTCT GAACGAGTTT CCTTTGATGA TCTAATTAGC CAGATCAGCC TCCTAGGCCA
  AGGAATTCTC TAAGCATCAC CAAAAAGATA TTACAGGACA GTCACACATC CAAGGCAAGC
  GAATCCGTTT CATCCCCTAC CTGGGACAGT GCTGAGCTGT TGCAAACTAA ACCTCTTACC
  AGATTTTGTC TGGCCTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37646267	NES09025620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27454934					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646267	NES09025620	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120931260 () rs orientation: forward

Symbol	Name	Function Class
Rr563773	regulatory region 563773	1135 bp proximal
Rr563774	regulatory region 563774	1433 bp proximal
Tgm7	transglutaminase 7	Intron
Tssr25900	transcription start site region 25900	381 bp downstream