rs27454931 SNP Detail

Summary

• ID
  rs27454931
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120933746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTTCCAG ATACTTGGGC CAAGAATTTG GCACTGCATT
  CTAAACAGTT GAGAATGCAC TCAGCTGAGT AAAGTGCCCC TGATCCTCAA AAGGTAGTTA
  K
  CAAGGCAGCA AAGCTCTAAC TATAAGTCAA GTCTCTTGGG GAGGTCTATG TGTGTGGTCA
  GGCAATCTGG GATATACCTA CTCGAAGCTC CATCTTCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37646264	NES09025598	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	T		G	T	G	G		G	T	G	G		G
ss45262276	mCV27558611	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		T
ss147379399	ENSMUSSNP2269277	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								T
ss320481825	CHEV_2_120929001	CHEVERUD	SCREENING_POP	f	SNP													G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27454931					SNP	G	G	T	G	T	G	T	G	G	T	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646264	NES09025598	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120933746 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563773	regulatory region 563773			914 bp distal
Rr563774	regulatory region 563774			1032 bp distal
Tgm7	transglutaminase 7			Intron
				mRNA-UTR