rs27454929 SNP Detail

Summary

• ID
  rs27454929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120934258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGAACTCA GCTACACACT GCACCTTAGC CATGGACCAT
  TGGTGAACTC TAGACCTTTC ATGAGCTGCA ATGGACTCTG AGAGTAGGTA TTATCATGAC
  Y
  TGGTCTGAAG GGGAAATCAG GAAGAATCAA TGGGTGAGAC TTCACTCACC CGTGCACATA
  ACAGAAGCAA AGACCCAACA CTGTCCATAT TTCACAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37646262	NES09025571	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	C	T	C	C		C	T	C	C		C
ss147379420	ENSMUSSNP764125	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320481826	CHEV_2_120929513	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27454929					SNP	C	C	T	C	T	C	T	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646262	NES09025571	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120934258 () rs orientation: forward

Symbol	Name	Function Class
Rr563773	regulatory region 563773	1426 bp distal
Rr563774	regulatory region 563774	1544 bp distal
Tgm7	transglutaminase 7	Intron