rs27453725 SNP Detail

Summary

• ID
  rs27453725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118940984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAAGTTT TTGGGTCTTG GGGTATTTGT TTCTTCTACC
  CCTTTCTATC TCAATTTAAC TGAGAATGAA TAAACCTTTT CTTGTTTGAC AGCCACTGGT
  R
  TCCTTTGCCT CTTAAATTTC TAAGCTAAGA TTTGCCCAGA TTATAATTCT AATTTCCAGG
  AGGAGCAATT CATTTTTTAC CTGCTATCAA TCAGTTTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37651260	NES09026748	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		G	A	G	G		G	G	G		G
ss45377518	mCV23832895	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		A
ss147323331	ENSMUSSNP1040871	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss320473757	CHEV_2_118936239	CHEVERUD	SCREENING_POP	f	SNP													G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27453725					SNP	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651260	NES09026748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118940984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	1876 bp proximal
Gm57476	predicted gene, 57476	1647 bp downstream
Rr563413	regulatory region 563413	1652 bp distal
Rr563414	regulatory region 563414	1026 bp proximal
Rr563415	regulatory region 563415	1217 bp proximal
Rr563416	regulatory region 563416	1814 bp proximal