rs27453724 SNP Detail

Summary

• ID
  rs27453724
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118942673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGGAGTAT GAGATCTTGT CTGAAAACAC CTAGATGTAT
  AACAAGAAAC ATACGAAGTT CCTGGCAAAC TCCACAAACC TTTACTTTAT TCAATTTTGC
  K
  CCTACTTTTC TGGAGTAACC ACTACAAAGC GAGAGAAGAA AAAAAACACT AGAGAGTGAG
  TTATTTCGCT TTAGTTTTTG GTAGTTTTAT GAATGTATA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37651259	NES09026676	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	T	T	G	T	T		G	T	T	T		T
ss45230096	mCV23833169	ABI	CRAMUS_MOUSE	f	SNP	T	T	G						G
ss147323357	ENSMUSSNP3823383	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
ss320473763	CHEV_2_118937928	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27453724					SNP	T	T	G	T	G	T	T	T	G	T	T	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651259	NES09026676	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118942673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	187 bp proximal
Gm57476	predicted gene, 57476	within coordinates
Rad51	RAD51 recombinase	622 bp upstream
Rr563414	regulatory region 563414	642 bp distal
Rr563415	regulatory region 563415	451 bp distal
Rr563416	regulatory region 563416	125 bp proximal
Rr563417	regulatory region 563417	628 bp proximal
Tssr19603	transcription start site region 19603	617 bp upstream
Tssr25799	transcription start site region 25799	556 bp downstream