rs27453723 SNP Detail

Summary

• ID
  rs27453723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118942829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAAACCCTG TCTCGAAAAC CAAAAAAAAA AAAAAAAAAG AGTTCAAGGA GTATGAGATC
  TTGTCTGAAA ACACCTAGAT GTATAACAAG AAACATACGA AGTTCCTGGC AAACTCCACA
  AACCTTTACT TTATTCAATT TTGCGCCTAC TTTTCTGGAG TAACCACTAC AAAGCGAGAG
  AAGAAAAAAA ACACTAGAGA GTGAGTTATT TCGCTTTAGT TTTTGGTAGT TTTATGAATG
  TATATATTTA GATTATATCC ACCGGTCCCA ACCCCCGCCC AATTAAAAGG TTTTTTTTTT
  Y
  CACCTCGCTG ATTCCCACAC TGGTTTTCTA ATCGCTGGCT CCATTCGCAG GTTTTATCTT
  TATTCCAGCT TCTTCATCTC TGCCGCCCAC AGAGACCAAG AGAACACCTG GTTCCAAAGC
  ATACCATCCC AACTACCAAA GATCCACACT CTGCCAGAAC TGGCCAAAGC CTTTCTGACG
  GAAGTCCACA TCCGCTGTGC AAGAAGTTTT GCAGAGGTGC TTCCGCAGCA GTGCATTCTG
  GGTTATGTAG TCCTGGGCTG ATCACATCGT CTTTGCAGAC TTGTAGTCCT CAGTCGGGTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37651258	NES09026677	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T		C	C	T	C	T	T	C
ss45293456	mCV23833179	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27453723					SNP	T	T	C	T	C	T	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651258	NES09026677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118942829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	31 bp proximal
Gm57476	predicted gene, 57476	within coordinates
Rad51	RAD51 recombinase	466 bp upstream
Rr563414	regulatory region 563414	798 bp distal
Rr563415	regulatory region 563415	607 bp distal
Rr563416	regulatory region 563416	within coordinates
Rr563417	regulatory region 563417	472 bp proximal
Tssr19603	transcription start site region 19603	461 bp upstream
Tssr25799	transcription start site region 25799	400 bp downstream