rs27453721 SNP Detail

Summary

• ID
  rs27453721
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118943009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA CTGGCCAAAG CCTTTCTGAC
  S
  GAAGTCCACA TCCGCTGTGC AAGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37651256	NES09026679	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		C	G	G	C		C	G	G	C		G
ss45351589	mCV23833180	ABI	CRAMUS_MOUSE	f	SNP		G	G					C		G
ss147323362	ENSMUSSNP2068108	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss320473764	CHEV_2_118938264	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27453721					SNP	G	G	G	G	G	G	G	C	C	G	G	C	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651256	NES09026679	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118943009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	within coordinates
Gm57476	predicted gene, 57476	within coordinates
Rad51	RAD51 recombinase	286 bp upstream
Rr563414	regulatory region 563414	978 bp distal
Rr563415	regulatory region 563415	787 bp distal
Rr563416	regulatory region 563416	within coordinates
Rr563417	regulatory region 563417	292 bp proximal
Tssr19603	transcription start site region 19603	281 bp upstream
Tssr25799	transcription start site region 25799	220 bp downstream