rs27453720 SNP Detail

Summary

• ID
  rs27453720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118943098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCATC TCTGCCGCCC
  ACAGAGACCA AGAGAACACC TGGTTCCAAA GCATACCATC CCAACTACCA AAGATCCACA
  CTCTGCCAGA ACTGGCCAAA GCCTTTCTGA CCGAAGTCCA CATCCGCTGT GCAAGAAGTT
  TTGCAGAGGT GCTTCCGCAG CAGTGCATTC TGGGTTATGT AGTCCTGGGC TGATCACATC
  R
  TCTTTGCAGA CTTGTAGTCC TCAGTCGGGT AACCAGAAAG GCCGGATCAG AACAATCATA
  AAGGAAGGGA AGAGTGACCC TACGAAATCA CTCGGCTTCA AAGCCGTCCG GCATGTCCGT
  CAGGTTCGCA GCAGAAGCGG AAGTAGGTAT GAGGCGGGTC GGAGAAAGGC GTGATGACGT
  TGCAGCGATA GGAGCGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37651255	NES09026680	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27453720					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651255	NES09026680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118943098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	within coordinates
Gm57476	predicted gene, 57476	within coordinates
Rad51	RAD51 recombinase	197 bp upstream
Rr563414	regulatory region 563414	1067 bp distal
Rr563415	regulatory region 563415	876 bp distal
Rr563416	regulatory region 563416	within coordinates
Rr563417	regulatory region 563417	203 bp proximal
Tssr19603	transcription start site region 19603	192 bp upstream
Tssr25799	transcription start site region 25799	131 bp downstream