rs27453716 SNP Detail

Summary

• ID
  rs27453716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118943430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGCGGA AGTAGGTATG
  AGGCGGGTCG GAGAAAGGCG TGATGACGTT GCAGCGATAG GAGCGTGAGG ATTTGGCGGG
  ATTTCCGAAA GTCGCGCGCC GTGCGCAGAT CCGCGCCTGG GCAAAGCCGA GGCGCTCCCA
  CAGGTGTGGC CAGGAAGACT GAAATTTTTC GTAGAAAACC TGACAGAGGA GCAACGAAGC
  R
  CGTTCGAGCC GGGTGAAGTG GGGGGAGTGT GGTGTGTGCA GAGCCGGCTG CCCGGAGGAG
  CGAGCGGCCC GTGGCCGCGG GACAGGTGAG TGTGCGGCGC CGGCGCACCC CTTCCATGGC
  CGCTCGGCTT CTTGAGCCGG CTCAGGCCAG TGCTCCCGTA GCCAGCTTTG TGGGTCCCCT
  CTACGCTGAG AAACCGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37651251	NES09026684	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27453716					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651251	NES09026684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118943430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12105	CpG island 12105			within coordinates
Gm57476	predicted gene, 57476			119 bp upstream
Rad51	RAD51 recombinase			mRNA-UTR
				Noncoding-Transcript-Variant
Rr563414	regulatory region 563414			1399 bp distal
Rr563415	regulatory region 563415			1208 bp distal
Rr563416	regulatory region 563416			132 bp distal
Rr563417	regulatory region 563417			within coordinates
Tssr19603	transcription start site region 19603			67 bp downstream
Tssr25799	transcription start site region 25799			180 bp upstream