rs27453714 SNP Detail

Summary

• ID
  rs27453714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118943506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCTGACAG AGGAGCAACG AAGCGCGTTC GAGCCGGGTG
  AAGTGGGGGG AGTGTGGTGT GTGCAGAGCC GGCTGCCCGG AGGAGCGAGC GGCCCGTGGC
  Y
  GCGGGACAGG TGAGTGTGCG GCGCCGGCGC ACCCCTTCCA TGGCCGCTCG GCTTCTTGAG
  CCGGCTCAGG CCAGTGCTCC CGTAGCCAGC TTTGTGGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37651249	NES09026686	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	C	T	C	C		C	C		C
ss147323387	ENSMUSSNP3221444	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss320473767	CHEV_2_118938761	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27453714					SNP	C	T	C	T	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651249	NES09026686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118943506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12105	CpG island 12105			within coordinates
Gm57476	predicted gene, 57476			195 bp upstream
Rad51	RAD51 recombinase			mRNA-UTR
				Noncoding-Transcript-Variant
Rr563414	regulatory region 563414			1475 bp distal
Rr563415	regulatory region 563415			1284 bp distal
Rr563416	regulatory region 563416			208 bp distal
Rr563417	regulatory region 563417			within coordinates
Tssr19603	transcription start site region 19603			143 bp downstream
Tssr25799	transcription start site region 25799			256 bp upstream