rs27453712 SNP Detail

Summary

• ID
  rs27453712
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118943822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT CAGGTTCACT TCTGTGGTCC
  K
  GACGCAGGAA GCTGAGATCA GAGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37651247	NES09026688	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	T	T	G	T	G	G	T	T	G	T
ss147323396	ENSMUSSNP6335998	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27453712					SNP	T	T	G	T	G	T	T	T	G	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651247	NES09026688	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118943822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12105	CpG island 12105			44 bp distal
Gm57476	predicted gene, 57476			511 bp upstream
Rad51	RAD51 recombinase			Intron
				Noncoding-Transcript-Variant
Rr563414	regulatory region 563414			1791 bp distal
Rr563415	regulatory region 563415			1600 bp distal
Rr563416	regulatory region 563416			524 bp distal
Rr563417	regulatory region 563417			21 bp distal
Tssr19603	transcription start site region 19603			459 bp downstream
Tssr25799	transcription start site region 25799			572 bp upstream