rs27447748 SNP Detail

Summary

• ID
  rs27447748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:129143823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCTCTT CCTGTCTACA
  TGGTCACCGT ATTCTTCTAC TGTGCTTCTT CTCTAACTTC CCAGCTGAGC TCTCTGCTCT
  CTCTAGTGCT TTTGTTCTGG ACTATTGTCT ATTTAAGAAA TATAAATGGC ACCAGCACCC
  TGCACCCTCT GAAAGCCTTT GGTGGCTTTC AACTGTATAC CAAATGACCA GGACCAAAAG
  Y
  GCTCCGCTGT TACTTGCAGC TGGCCTGTGG GCTCATGAAG CTCTAGGGAA CTCAGGTCTT
  TATAGTGAAC TGAGATCCTT CTGTTGGGAT GTCCCATCCC TACCTTGTAT TAGCTGGTCT
  GTCTCTCAGA GGGTCTGCTC TTGTCCCTCC CTCTAAATAA CACTCCTCCA TTTTTCTGTC
  TTAGTGTCTT GGGCATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37622273	NES09015818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27447748					SNP	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622273	NES09015818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129143823 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	Intron
Rr564905	regulatory region 564905	1342 bp distal
Tssr20111	transcription start site region 20111	1459 bp downstream
Tssr26201	transcription start site region 26201	1916 bp upstream
Tssr26202	transcription start site region 26202	1853 bp upstream
Tssr26203	transcription start site region 26203	1831 bp upstream
Tssr26204	transcription start site region 26204	1726 bp upstream
Tssr26205	transcription start site region 26205	1673 bp upstream
Tssr26206	transcription start site region 26206	1641 bp upstream
Tssr26207	transcription start site region 26207	1563 bp upstream
Tssr26208	transcription start site region 26208	1335 bp upstream
Tssr26209	transcription start site region 26209	1254 bp upstream
Tssr26210	transcription start site region 26210	1137 bp upstream
Tssr26211	transcription start site region 26211	1000 bp upstream
Tssr26212	transcription start site region 26212	957 bp upstream
Tssr26213	transcription start site region 26213	354 bp upstream
Tssr26214	transcription start site region 26214	1052 bp downstream
Tssr26215	transcription start site region 26215	1075 bp downstream
Tssr26216	transcription start site region 26216	1861 bp downstream
Tssr26217	transcription start site region 26217	1891 bp downstream