rs27446202 SNP Detail

Summary

• ID
  rs27446202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128138883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATGTGG TTGCTGGGAT
  TTGAACTCAG GACCTTCGGA AGAGCATTCA GTGCTCTTAA CCGCTGAGCC ATCTCTCCAG
  GCCCCTGCTC TGACCATTTA AACCCCCTCT TGCCCTCCAG TGAGAGCACA AGCACCAATC
  TTCCAGGCTT CACCTTTCAT GCTCCCCTCC CCCAAAGCAA GCTCAGGCTC TTTCTCCAAA
  R
  CAGGAAGTTA CAGATAGTGA AGTGACATCG GTCCCTGGCC TCCACTGGTA GCCTCCCCCA
  CTCTCTCCCT CATTCTGAGC AACGTCCTCT GACTAACTCC CGAGGTTCTC CTTCCTCTCT
  GGAGCCCCCT TGCATCAGCG CAGCTGCCTG GACTCCTCCC AATGCCCAAC TAGAATTTCC
  AGAACCTTCC AAGCTAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626229	NES09016396	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446202					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626229	NES09016396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128138883 () rs orientation: forward

Symbol	Name	Function Class
Morrbid	myeloid RNA regulator of BCL2L11 induced cell death	1700 bp downstream
Rr397297	regulatory region 397297	1476 bp downstream
Rr564694	regulatory region 564694	1329 bp distal
Rr564695	regulatory region 564695	1785 bp distal
Rr564696	regulatory region 564696	918 bp distal
Rr564697	regulatory region 564697	within coordinates
Rr564698	regulatory region 564698	921 bp proximal
Tssr26154	transcription start site region 26154	1955 bp upstream
Tssr26155	transcription start site region 26155	1919 bp upstream