rs27446200 SNP Detail

Summary

• ID
  rs27446200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128139200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGACATTCC TCTGGGGCTG GTTCTGTCAC AGGATTTTTT
  CCCCCTGAGG ATTTATTGCC AGGAAAAAGA ATTCCCCAAA GGAACGTTGT GATTTCTCAT
  R
  TTGGACAATG AGAGCCAGAC ACTGTTCTTT CTGTCGCTGG GATGCTTCAG TGCTACCCTA
  ATGTGTAGGA CAGATGGTTC TCAACCTGTG GGTTGCGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626227	NES09016398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A		G		G	G	G	G	A	G
ss45256453	mCV22523386	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446200					SNP	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626227	NES09016398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128139200 () rs orientation: forward

Symbol	Name	Function Class
Morrbid	myeloid RNA regulator of BCL2L11 induced cell death	1383 bp downstream
Rr397297	regulatory region 397297	1793 bp downstream
Rr564694	regulatory region 564694	1646 bp distal
Rr564696	regulatory region 564696	1235 bp distal
Rr564697	regulatory region 564697	within coordinates
Rr564698	regulatory region 564698	604 bp proximal