rs27446116 SNP Detail

Summary

• ID
  rs27446116
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128159144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACATTTGT TAAGAAAAAG TCTGAGAATT TAAGAATGCA
  ACCAAGAAGA ATGTACTGGT TGGGGCATGG CTAGTTGGGC AGCTACCTTT GTGAAAAGCA
  S
  TCAAGTCCAG CAATGACATT GTAAAAGCTA AGACACCAAC ATGCTAAGGG TTGGGGGTTA
  AGGGTCAGGG GGAATTTTCT GACACCTGGG GATGTAAAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626143	NES09015864	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	C	G	C	G	G	C	G	G	C	G
ss147557012	ENSMUSSNP2352609	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446116					SNP	G	G	G	G	G	C	G	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626143	NES09015864	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128159144 () rs orientation: forward

Symbol	Name	Function Class
Morrbid	myeloid RNA regulator of BCL2L11 induced cell death	within coordinates
Rr564705	regulatory region 564705	1078 bp proximal
Rr564706	regulatory region 564706	1684 bp proximal
Tssr643	transcription start site region 643	1987 bp upstream
Tssr26157	transcription start site region 26157	1655 bp downstream