rs27428311 SNP Detail

Summary

• ID
  rs27428311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90795732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAAGGTT TTCAAGTAAA
  AGAGGTGACT TACTTGTCTT TTTTGGTTTG ATTTGTTTAG GTTTGTCAGT TACAAATTAT
  AGAAGATTGA GAATTTTGGG ACTGGGTGGA GAAAAGATCT GTAGTCAGCT AATATTATCT
  TGAGCAGATG CCAGGCTGGT GGACTTAGTG TCAGGAGGTT TCTGAGCTGC TTTAGAAACA
  Y
  GGCTCACTGA AGAAGTGCTT TGTGATCTCA AAGATCAGCT CGGAAGAGTG GGACTCAACA
  CATTTTCTGT TCATGTAAAT TTTGAGTATA AAAAAACTGA GATTTTGTGT GCATCAAGAT
  CTTTGGAGTG GGTACAGTAG GACTATTAAT TTGCCTTTTG CTGAGAAGAG CTGTGGAGAA
  TATCTGGCTA TTTTTGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37605360	NES09109310	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27428311					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605360	NES09109310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90795732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf1	CUGBP, Elav-like family member 1			Intron
				Noncoding-Transcript-Variant
Rr560607	regulatory region 560607			188 bp distal
Rr560608	regulatory region 560608			205 bp proximal
Tssr18808	transcription start site region 18808			307 bp downstream
Tssr18809	transcription start site region 18809			279 bp downstream