rs27426654 SNP Detail

Summary

• ID
  rs27426654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115897424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTACGCGCGC
  GTGCGTGCGT GCGCGTGACC GCTGTGCGCC TCTAAAGTGA ATCTTGGATC TAGGAAGCAC
  CGGAGGAGAA AGATTAAAAA GCATGTGAGA CAGAAGATGC TTGCGAGGAG TGGCTGGCTC
  TGGCTGCCCA GCTTTGTTGT GGTTGCCCTG GGCGCAGCGG TTGTAAAGAG GGCTAAAGGC
  Y
  GAGTTAATTA CACCGGGAGG ATTTCGCTGG ATGGGGACCA TGGGACTGGC TCCTAAAGTT
  TTCCCAAAAG GAAAAGGAAG CGAGTAGGGT TAAAAAGGTA AATACCCGAC TAGGTTTTGG
  TAGAAACTAG TTCTGGCCGG GGTCCCGCCC AATCCCTGGC CGGAGTTCCA GCTGGCTTTA
  CCTCTGCTCT GCTGTTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37660576	NES09039092	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27426654					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37660576	NES09039092	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115897424 () rs orientation: forward

Symbol	Name	Function Class
2700033N17Rik	RIKEN cDNA 2700033N17 gene	within coordinates
Cpgi12068	CpG island 12068	941 bp distal
Cpgi12069	CpG island 12069	within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene	282 bp upstream
Meis2	Meis homeobox 2	Intron
Rr562986	regulatory region 562986	1406 bp distal
Rr562987	regulatory region 562987	798 bp distal
Rr562988	regulatory region 562988	within coordinates
Rr562989	regulatory region 562989	535 bp proximal
Rr562990	regulatory region 562990	1036 bp proximal
Rr562991	regulatory region 562991	1162 bp proximal
Tssr19467	transcription start site region 19467	270 bp upstream
Tssr19468	transcription start site region 19468	990 bp upstream
Tssr25724	transcription start site region 25724	1810 bp upstream
Tssr25725	transcription start site region 25725	1705 bp upstream
Tssr25726	transcription start site region 25726	1287 bp upstream
Tssr25727	transcription start site region 25727	1254 bp upstream
Tssr25728	transcription start site region 25728	1238 bp upstream
Tssr25729	transcription start site region 25729	1208 bp upstream
Tssr25730	transcription start site region 25730	1147 bp upstream
Tssr25731	transcription start site region 25731	1090 bp upstream
Tssr25732	transcription start site region 25732	978 bp upstream
Tssr25733	transcription start site region 25733	880 bp upstream
Tssr25734	transcription start site region 25734	182 bp downstream
Tssr25735	transcription start site region 25735	212 bp downstream
Tssr25736	transcription start site region 25736	412 bp downstream
Tssr25737	transcription start site region 25737	448 bp downstream