rs27426653 SNP Detail

Summary

• ID
  rs27426653
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115897531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGAAGA TGCTTGCGAG
  GAGTGGCTGG CTCTGGCTGC CCAGCTTTGT TGTGGTTGCC CTGGGCGCAG CGGTTGTAAA
  GAGGGCTAAA GGCTGAGTTA ATTACACCGG GAGGATTTCG CTGGATGGGG ACCATGGGAC
  TGGCTCCTAA AGTTTTCCCA AAAGGAAAAG GAAGCGAGTA GGGTTAAAAA GGTAAATACC
  S
  GACTAGGTTT TGGTAGAAAC TAGTTCTGGC CGGGGTCCCG CCCAATCCCT GGCCGGAGTT
  CCAGCTGGCT TTACCTCTGC TCTGCTGTTT CCCCGCGGCT GCGCGTCAAT CACCGAGAGA
  CGAGAGCTGG GGGCGGAGCT TTGGTCACCC GGCGCGCGTA GCCGGGTTCA CCCTGCCGCC
  ACCAGGCAGC TGGCAGCGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37660575	NES09039093	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27426653					SNP	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37660575	NES09039093	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115897531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			within coordinates
Cpgi12068	CpG island 12068			1048 bp distal
Cpgi12069	CpG island 12069			within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene			175 bp upstream
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
				Splice-Site
Rr562986	regulatory region 562986			1513 bp distal
Rr562987	regulatory region 562987			905 bp distal
Rr562988	regulatory region 562988			within coordinates
Rr562989	regulatory region 562989			428 bp proximal
Rr562990	regulatory region 562990			929 bp proximal
Rr562991	regulatory region 562991			1055 bp proximal
Tssr19467	transcription start site region 19467			163 bp upstream
Tssr19468	transcription start site region 19468			883 bp upstream
Tssr25724	transcription start site region 25724			1917 bp upstream
Tssr25725	transcription start site region 25725			1812 bp upstream
Tssr25726	transcription start site region 25726			1394 bp upstream
Tssr25727	transcription start site region 25727			1361 bp upstream
Tssr25728	transcription start site region 25728			1345 bp upstream
Tssr25729	transcription start site region 25729			1315 bp upstream
Tssr25730	transcription start site region 25730			1254 bp upstream
Tssr25731	transcription start site region 25731			1197 bp upstream
Tssr25732	transcription start site region 25732			1085 bp upstream
Tssr25733	transcription start site region 25733			987 bp upstream
Tssr25734	transcription start site region 25734			75 bp downstream
Tssr25735	transcription start site region 25735			105 bp downstream
Tssr25736	transcription start site region 25736			305 bp downstream
Tssr25737	transcription start site region 25737			341 bp downstream