rs27426652 SNP Detail

Summary

• ID
  rs27426652
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115897612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTAAAAAG GTAAATACCC GACTAGGTTT TGGTAGAAAC
  TAGTTCTGGC CGGGGTCCCG CCCAATCCCT GGCCGGAGTT CCAGCTGGCT TTACCTCTGC
  K
  CTGCTGTTTC CCCGCGGCTG CGCGTCAATC ACCGAGAGAC GAGAGCTGGG GGCGGAGCTT
  TGGTCACCCG GCGCGCGTAG CCGGGTTCAC CCTGCCGCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37660574	NES09039094	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	G	G	G	G	T	G	G	T	G	G	T
ss147270063	ENSMUSSNP2112213	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27426652					SNP	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37660574	NES09039094	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115897612 () rs orientation: forward

Symbol	Name	Function Class
2700033N17Rik	RIKEN cDNA 2700033N17 gene	within coordinates
Cpgi12068	CpG island 12068	1129 bp distal
Cpgi12069	CpG island 12069	within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene	94 bp upstream
Meis2	Meis homeobox 2	mRNA-UTR
Rr562986	regulatory region 562986	1594 bp distal
Rr562987	regulatory region 562987	986 bp distal
Rr562988	regulatory region 562988	within coordinates
Rr562989	regulatory region 562989	347 bp proximal
Rr562990	regulatory region 562990	848 bp proximal
Rr562991	regulatory region 562991	974 bp proximal
Tssr19467	transcription start site region 19467	82 bp upstream
Tssr19468	transcription start site region 19468	802 bp upstream
Tssr25724	transcription start site region 25724	1998 bp upstream
Tssr25725	transcription start site region 25725	1893 bp upstream
Tssr25726	transcription start site region 25726	1475 bp upstream
Tssr25727	transcription start site region 25727	1442 bp upstream
Tssr25728	transcription start site region 25728	1426 bp upstream
Tssr25729	transcription start site region 25729	1396 bp upstream
Tssr25730	transcription start site region 25730	1335 bp upstream
Tssr25731	transcription start site region 25731	1278 bp upstream
Tssr25732	transcription start site region 25732	1166 bp upstream
Tssr25733	transcription start site region 25733	1068 bp upstream
Tssr25734	transcription start site region 25734	within coordinates
Tssr25735	transcription start site region 25735	24 bp downstream
Tssr25736	transcription start site region 25736	224 bp downstream
Tssr25737	transcription start site region 25737	260 bp downstream